Showing posts with label DNA. Show all posts
Showing posts with label DNA. Show all posts

Friday, October 31, 2008

Reasons: III. Markers of Intelligence

In response to a friend who asked, I recently wrote an essay entitled "Reasons for My Belief". The full essay can be found by clicking here. This post is the third in a series in which I single out the five evidences from the essay. The earlier post did not allow for comments. As I repost these sections, I am seeking readers' comments. So, please, join in the discussion ...


3) markers of intelligence (in the origin of life)

Hume was right! When the eighteenth century philosopher David Hume argued so effectively against the arguments of design, he did so by suggesting that nature designs itself! And ever since Hume, science has been confirming that to be the case on many fronts. Matter is marvelously capable of self-organization. We understand the principles by which the universe structured itself, how matter coalesced following the big bang into stable star systems and galaxies, etc. Built into the chemistry and physics of the universe is an uncanny capacity to bring organization out of chaos, despite the laws of entropy which might predict otherwise. Built into life itself is a principle of self-design. Darwin helped us to see how random processes have resulted in variations subject to natural selection giving rise to the marvelous diversity of life forms on our planet today. Dawkin’s “blind watchmaker” is truly stunning in his ability to generate both diversity and functional complexity. But all these natural explanations for the amazing design and beauty we observe fail to answer the ultimate question: Why would a universe possess these remarkable characteristics in the first place? Why is the universe so full of the capacity to self-design, to self-organize? Why is it that everywhere we look, we find a cosmos busy crafting itself?

The skeptics, in their zealousness to write God out of the script, may have inadvertently stumbled upon the very genius of the Creator. The stronger the argument for a self-organizing universe, the more cogently is the case made: this universe has the fingerprints of intelligence all over it. In the self-designing attributes of the cosmos, I see not an argument against God, but the most compelling argument for a greater Creator than we imagined, one whose intelligence and wisdom are seen in these very built-in processes. The intuitive sensibility of Paley’s argument has never been fully dispelled; it has only been pushed back in time, relegated to the deep mysteries of the Mastermind who first set it all into motion.

Nowhere is this proclivity toward self-organization more spectacular and compelling than inside the living cell. Michael Denton speaks to the design implicit in the living cell in Nature’s Destiny:
“From the knowledge we now have of the molecular machinery that underlies some of their extraordinary abilities, it is clear that cells are immensely complex entities. On any count the average cell must utilize close to a million unique adaptive structures and processes—more than the number in a jumbo jet. In this the cell seems to represent the ultimate expression in material form of compacted adaptive complexity—the complexity of a jumbo jet packed into a speck of dust invisible to the human eye. It is hardly conceivable that anything more complex could be compacted into such a small volume. Moreover, it is a speck-sized jumbo jet which can duplicate itself quite effortlessly.
“The fitness of the cell for its biological role in the assembly and functioning of the multicellular life gives every indication, as with so many of life’s constituents, of being unique. In the case of many of their key properties and abilities, it is difficult to imagine how these properties and abilities could be actualized except in a material form with the precise characteristics of the living cell. In other words, if we were to design from the first principles a tiny nanoerector about 30 microns in diameter with the capabilities of the cell—with the ability to measure the chemical concentration of substances in its surrounding medium; with the ability to measure time, to move, to feel its way around in a complex molecular environment, to change its form; with the ability to communicate with fellow nanoerectors using electrical and chemical messages and to act together in vast companies to create macroscopic structures—we would end up redesigning the cell.”
Denton uses the term “directed evolution” to help answer the inevitable questions about how complexity of such staggering proportions could ever come to self-organize. Mike Gene suggests another term, which I prefer: front loaded evolution. Both of these theorists have proposed that the incredibly elaborate machinery inside the cell, machinery composed of variously shaped protein molecules specified by RNA blueprints, demand a designer. Not the designer of the Intelligent Design theorists who propose a designer for complex organisms. Rather, the designer of the DNA process which is capable of building such organisms over time through the processes Darwin described. Denton writes, "the evolutionary process of tracing out the tree of life becomes a perfectly natural phenomenon; the inevitable unfolding of a preordained pattern, written into the laws of nature from the beginning." (Nature’s Destiny, 282)

Some will reject this argument on the grounds that it lacks the full array of material evidence. Denton sees the evidence coming in small bits, like the pieces of a jigsaw puzzle:
"Because the validity of the argument [biocentric design of the universe] depends on so many independent lines of evidence, the conclusion is not materially threatened because the whole picture is not yet complete or because this or that phenomenon such as the origin of life or the mechanism of evolution is not understood. Just as the meaning of a jigsaw puzzle may be obvious long before all the pieces are perfectly placed, so too my argument does not necessitate that everything be explained." (Nature’s Destiny, p xvi.)
Others will object that this argument merely proposes another god-of-the-gaps. I reject god-of-the-gaps approaches because I am convinced that gaps in natural evolution are diminishing as our understanding grows. It may be helpful to distinguish between the “gaps” which are temporary empty spots in our current knowledge, and “gaps” which extend beyond the reasonable limits of science. Abiogenesis may be just such a gap. Far from slowly closing, the gap of abiogenesis becomes more and more daunting as our understanding grows. The more we know about evolution, the more we know about DNA, the greater becomes the mystery of the first cell, and of the DNA alphabet itself. It is this widening gap which I believe is unlikely ever to be filled. In this regard, I am in alignment with Denish D’Souza who has said, “I'm not making a god-of-the-gaps argument arguing that because evolution can't account for it, therefore God did it. But neither should we submit to the atheism-of-the-gaps, that holds since science explains some things, it can surely explain everything.”

Tuesday, March 4, 2008

Book Review: Random Designer

In September of last year, Olivet Nazarene University Professor Richard G. Colling found himself embroiled in a controversy over views expressed in this book. Random Designer (Browning Press, 2004) had been used as a textbook in some of his science courses, and recommended by other professors at the university. When certain church members and pastors learned of the content of Random Designer, they objected to Colling’s views on evolution loudly and persuasively. Despite the support of the administration and faculty at Olivet, several of these denominational leaders wielded their influence (read “threatened to withhold their financial support”) to intervene and compel the removal of Colling from the biology department.

One unintended consequence of their action is that I picked up and read Colling’s work. Hopefully, the controversy will spur many such new sales, because I believe that many will benefit from reading
Random Designer. The book targets some of those very pastors that led the charge against Colling, as indicated on this slip cover blurb:
"Written in easy-flowing personal narrative for working professionals, pastors, religious leaders, public school teachers, college students, and people of all faiths, Random Designer is a story of a loving and caring Creator who miraculously harnesses the random and chaotic forces of nature to accomplish his ultimate purposes. And now, after faithfully laboring for billions of years to bring His creation to an awareness of Himself, He calls to us from the deepest recesses of our minds. Will we hear His voice?"

Random Designer is divided into two sections. Section I deals with the science of randomness. Randomness is the necessary consequence of the laws that govern our cosmos, particularly the 2nd Law of Thermodynamics, or entropy. Colling shows how entropy works as a randomizer, and how this same law suffuses the earth with a constant flow of energy which in turn serves to being order to randomness. Hence, in Colling’s view, the natural rise of life on earth through evolutionary processes. Randomness becomes the necessary fodder for natural selection, and it is apparently the Designer’s tool of choice. If like me, you have contemplated the place of randomness in Creation, you will benefit from Colling’s descriptions of these processes.

In Section II, Colling turns from science to the theological and practical considerations of randomness. I want to highlight two of the chapters. One seeks to answer questions that surround Adam. Is Adam an historical figure? Is he a metaphorical “stand-in” for the human race? Colling explores these and other possibilities. A chapter which fascinated me is entitled “The Ultimate Creation”. Colling cites science which suggests that the human race may have arrived at the pinnacle of evolution. The same processes of randomness that increase complexity must also serve to maintain complexity. The complexity of the human genome may have reached a balancing point. Or to put it another way, the human genome may be nearing full capacity. If this is true, as genetics suggests it may be, then it is not unreasonable to conclude that we are the ultimate creation of the Random Designer!

Random Designer is written for undergraduates, and as such is an easy read. If you are seeking understandings which bring purpose and order to a world of apparent randomness, you may find Colling’s book helpful.

Wednesday, January 30, 2008

POST #12: Randomness, what does it say about purpose?

ran’dom•ness, noun, a lack of order, purpose, cause, or predictability; proceeding, made, or occurring without definite aim, reason, or pattern.
de•sign’, noun, the purposeful or inventive arrangement of parts or details.

I am currently reading Random Designer by Richard G. Colling. (I will be offering a review here soon.) Colling owns up to the seemingly oxymoronic nature of his own title in the first chapter. According to the definitions above, randomness implies a lack of purpose, while design implies purposefulness. Can randomness ever be “by design” without ceasing to be random? Can randomness be purposeful? In this post, I will explore these questions and invite your comments. In future posts, I will further develop the prospect of randomness in evolution/creation, and the theological possibilities suggested by randomness.

Randomness is the linchpin of naturalistic evolution. A continual stream of apparently unguided genetic mutations form the potential raw material of gradual change demanded by the Darwinian model. Only an extremely small percentage of these mutations actually result in useful adaptations that offer improvement to the species. The great majority are neutral in effect, and some are damaging. This vast pool of mostly inconsequential mutations yielding only rare adaptive changes gives rise to the notion of randomness as the driver of evolutionary processes.

But does such a view of randomness (which I accept) necessarily translate into purposelessness? Can randomness be intentional? Can randomness be teleological (that is, can it serve a long-range purpose)? Can randomness be a tool to generate desired effects which would be unattainable otherwise? The answer to all these questions is yes!

This has been, and promises to continue to be, a politically charged election year in the United States. And in the ever changing fortunes of the candidates, we have been reminded again and again of the power of the unofficial poll. Just this morning I read that both John Edwards and Rudy Giuliani are likely to drop of their respective party’s nomination races. In each case, their decisions seem to be guided by the poll numbers in states which will vote next week. Polls may be useful, but their accuracy and usefulness hinge on one very essential polling principle:
random sampling. Because a relatively small number of potential voters are actually polled, and the results are extrapolated to predict how the full electorate is likely to vote, polling organizations recognize that their sample of voters must be random. Randomness is a necessary tool to accomplish a desired purpose. Poll takers thus go to great efforts to ensure randomness.

Or consider the example of random number generators (RNG). An RNG is a physical device, and/or computer based program, which is designed to do just what the name implies: spit out sequences of numbers that are genuinely random. In cases where absolute randomness is required, an RNG is sometimes more difficult to design than one might think. Random number generators are used in applications where unpredictability is desired such as in cryptography, statistical sampling and, of course, in gambling. So again we can see that the principle of randomness can be planned, intentional, and purposeful.

Back to the title of the book I’m reading:
Random Designer may not be as self-contradicting as it at first appears. Perhaps an Almighty Creator, able to accomplish his purposes in any manner he chooses might use randomness as His tool of choice. But, we may well ask, is it even possible for a sovereign God to leave things to chance? In Ecclesiates, Koheleth puzzles over such questions. In 3:1 through 17 he sees all that happens as falling in line with the timings and eternal purposes of God. Yet in 9:11 he observes that the race is not to the swift, nor the battle to the strong, and he laments that all is governed by chance. Koheleth seems content to live with the paradox; he offers no sure sounding logical solution.

When I consider the possibility of randomness in the purposes of God, my thoughts range far beyond arbitrary genetic mutations and adaptive changes in species. I’ve considered how randomness may function beyond evolution in the purposes of God. It may be His tool of choice to accomplish desired ends attainable through no other process. God may even now be using randomness.

As we move forward in this series of posts, we will discuss some possibilities about why God may be doing just that. We may discover how randomness provides meaning and texture to existence. We may find that randomness offers relevant answers to some very troubling questions about life, and about God. But first, in the next post, we will consider a common assumption: that randomness implies atheism.

Have you considered the possibility of randomness in the purposes of the Creator? Or does it seem impossible to you that a sovereign God could or would allow randomness to function in his Creation? Please comment ...

Thursday, January 24, 2008

Book Review: Relics of Eden

Whether believers are comfortable with it or not, biological evolution is an issue that is not going away anytime soon. As the very strong case for common descent settles down upon the church in the coming years, many will be deeply troubled by it’s implications. To dismiss the issue as inconsequential ignores the impact it will have on the faith of many. The head-in-the-sand approach of many believers who refuse to study the question, choosing to hold on to their long-held beliefs strikes me as dangerous. For this reason, I am suggesting to my friends who wish to be informed on this subject this book, Relics of Eden by Daniel J. Fairbanks.

I read
Relics of Eden (Prometheus Books, 2007) upon the recommendation of my friend, Gordon Glover. Fairbanks, writing from his perspective as a research geneticist, lays out in layman’s language some of the basic building blocks for reconstructing the history of life on our planet from DNA. He proceeds to give the reader an overview of what DNA tells us about the interrelatedness of species. I found the book easy to read, and informative. Some of the early chapters (as he develops the building blocks of genetic understanding) are somewhat technical. But the payoff comes as he demonstrates how these bits of information are used to paint a remarkably consistent picture of our past.

As I have said elsewhere, I consider common descent to be undeniable in the face of DNA evidence. Either humans share a common ancestry with all living things, or God went to a great deal of trouble to make it look that way, right down to the tiniest details of our DNA. If evolution did not happen, then the Creator is a trickster and a deceiver, and all science is rendered meaningless.
Relics of Eden powerfully confirms this understanding (Fairbanks describes the mounting evidence as “spectacular”). But the trail of DNA science does not stop there. Comparative DNA is like an accurate time clock, giving us strong clues regarding the “when” of various evolutionary events. This growing treasure trove of information is also being used to reconstruct the great human migrations across our planet, and to do so with a precision which has never been possible for the anthropologist before. And perhaps most significantly, DNA science today is able to trace the history and development of various diseases, and offer up new ways of combating them. It is ironic that so many who resist what DNA is telling us about the history of life are more than ready to accept the great medical advancements of our day which are based upon the same science. Modern medical science is built upon the evolutionary model.

The final two chapters consist of an appeal to both sides of what Fairbanks characterizes as a false dichotomy: that somehow
faith and reason cannot co-exist. Without detailing his own beliefs, Fairbanks makes it clear that he is a man of faith who believes in God as Creator. He appeals to those who choose to perpetuate psuedo-scientific creationism and Intelligent Design to reexamine the evidence, and lay down their battle-axes. I say, “Amen!”

Tuesday, January 15, 2008

I'm back ...

Though I only gave it a somewhat veiled remark, one of the chief reasons for my hiatus from blogging was a disturbance in my own church fellowship. I help to lead a small fellowship of 50 or so believers here in Toledo, Oregon. When my friends here learned (from my own mouth!) that I consider common biological descent to be undeniable, and that I am open to Darwinian evolution, which seems to be the most likely theory to explain common descent, many were deeply troubled. It resulted in a crisis in our church life, and in a number of important relationships.

It has become clear to me that many of my friends either do not understand what I am doing here on this blog, or they suspect that science is somehow leading me away from Biblical faith. Nothing could be farther from the truth!

Evolution is a very small piece of the larger picture I am trying to develop here at “OutsideTheBox” But it is the piece that results in the strongest reactions among my friends. As I reenter this arena of writing, and interacting with you, I wish at the outset to submit to you once again what I am trying to accomplish here, and how evolution fits into the bigger picture.

Some of my friends are offended or deeply disappointed with me. Others are undisturbed, but unconvinced. A handful (mostly those who have read
Francis Collins or Gordon Glover) find themselves in agreement with me. But there are others who have indicated that they just "don't care about this issue." That is, it matters little to them whether we got here by special creation or by natural processes. I must say that, as an isolated question, I am right there: it doesn't matter to me either. I frankly hated biology in school. Evolution is not some little hobby horse of mine. (I am far more interested in physics.) But here is the deal. I find that all of the scientific findings of the last 100 years play in big to our understanding of Scripture and theology. And I find that very few evangelical theologians and church leaders of our day have taken notice of this salient fact.

Not many people realize that after he came to his remarkable and earth shaking understandings about gravitational fields and the laws of motion, Newton spent the last years of his life thinking and writing about his favorite subject:
theology. But this has not been true for the 20th century leaders of science such as Einstein, Bohr, Hubble, or Dirac. What changed? For many centuries, believers drove the engine of scientific discovery, and the engine was fueled by their love of the Creator. And with each new revelation of natural truth, they would go back and adjust the theology of the church as needed. The exploration of our cosmos and natural phenomena was seen as a doorway to deeper and more accurate understandings of God. Of course, these adjustments were always in line with the written revelation, although often a change in the way we read and understand scripture was necessary. Science was helping us to “rightly divide the word of truth.”

But with the near wholesale rejection of Darwin at the turn of the 20th century, a new course was set. We deeded over nearly all of science to the secularists. The church, as a whole, paid little attention. And certainly, faith no longer drove science.

My main interest is today, as it has always been,
theology ... knowing and understanding God and his ways. And ultimately, not theoretical theology, but theology that filters down into the every day life of the believer. I study as I do because I want to make sense of my life and my world. I study science because it profoundly informs my theology ... it helps me to see what God might be up to in this world as he forms his Kingdom though people of faith. 

Evolution is a very small part of this picture. But evolution does imply some things about the possible place of randomness in the workings of God. Evolution does suggest some strong possibilities about how God may have chosen, and may still choose, to operate through natural processes. Evolution may have some extremely profound things to say about an ages-long battle between the powers of death and the Power of Life! 

But I am even more interested in things like Big Bang cosmology and what we have discovered about entropy in the last 40 years. Nothing in recent science touches upon theology more than this! It effects our doctrines of salvation, atonement, etc.; it profoundly effects eschatology; it effects the prayer of the church; it effects how and why we do what we do in the world. I am deeply interested in Einstein's relativity and how that impacts Newton's laws of motion, and how that, in turn, speaks to theological determinism (an expression of ultra-calvinism.) Newton left us with a world in which the very laws of physics strongly endorsed determinism. Einstein changes all of that. But even more, quantum physics changes all of that. Quantum physics may just be God's delayed message to us late-day people that the stage of this life, and the ultimate battle with evil, has not been rigged ... indeed, could not have been rigged.

So, left to itself, I couldn't care less about the competing sciences of origins. Or science in general! But I do care deeply about understanding pain and suffering. I do care deeply about why God watches Hitler and Pol Pot and Stalin from the sidelines, and chooses not to intervene. I do care deeply about the "why" of my wife’s life-threatening cancer. And I care deeply that the church learn to respond with better answers to the reasoned objections and questions currently being voiced by the skeptics. For many believers, the stock answers which the church has been offering for hundreds of years are adequate. For me, and many like me, they simply are not. 

This might be hard for my friends to believe, but I am actually not a science buff! I am, as I have always been, a disciple of Jesus and a student of the Bible first and foremost. But I am jazzed about the possibilities suggested strongly by what science is uncovering in God's universe, and how these possibilities impact the way we think about God, how he operates, and what the Scriptures are saying. 

I think about how science informs my understandings of the Scriptures when I consider and pray for my wife, Ginger. I think about how science informs my understandings of the Scriptures as I listen to and try to minister to hurting people (such as Kathy, a recent guest at our fellowship.) I think about how science informs my understandings of the Scriptures when I deal with hard questions about evil and suffering from young people today. I think about how science informs my understandings of the Scriptures when I encounter the arguments of my atheist friends (and many of those arguments would blow most believers I know right out of the water!). And I think about how science informs my understandings of the Scriptures when I consider the coming train wreck for the church when the powerful DNA evidence for common decent finally filters down to be understood by the masses. It will not be a pretty sight. I feel desperately the need to alert my friends. 

Apart from all of that ...
I couldn't care less about evolution!

Saturday, September 8, 2007

Book Review: The Language of God


I've been reading Francis Collins book, The Language of God. I recommend it for all who are still struggling with the concept of evolution, or for those who want a quick and easy intro to the state of science today as it relates to Christian faith.

Francis Collins is arguably the most prominent evangelical scientist of our day. He was the leader of the Human Genome Project through the 1980s and 1990s. He is an M.D. and one of the world’s leading DNA scientists. In simple and plain language, he gives an overview of the state of cosmology and quantum physics. But his forte is molecular biology, and the science of DNA. He presents a compelling case why it is that Darwinian evolution is accepted fact today among the vast majority of biologists. The evidence streaming in from genetic research is providing mounting confirmation of evolution. Collins writes,

The examples reported here from the study of genomes, plus others that could fill hundreds of books of this length, provide the kind of molecular support for the theory of evolution that has convinced virtually all working biologists that Darwin’s framework of variation and natural selection is unquestionably correct. (page 141)

He goes on to explain that many people are confused by the use of the term “theory”. Evolution is “theory” in the same sense that Newton’s laws of gravity are “theory”. Evolutionary theory underlies the study of biology in much the same way that music theory underlies the work of musicians. We seldom hear people deny belief in gravity. I’ve never heard a musician question the validity of music theory.

With sound reasoning and overwhelming evidence, Collins firmly rejects Creationism, and Intelligent Design. And he does so from the standpoint of a devout Bible believing Christian.

As my blog entries progress, we will visit the significance of evolution in the plan of God. While I will gladly discuss why I believe in evolution, I would much prefer to move on to discuss the meaning and significance of evolution, and the role which I believe naturalistic evolution has played in the plan of God.